spared.plotting.plot_all_slides

spared.plotting.plot_all_slides(dataset: str, processed_adata: AnnData, path: str) → None

Plot all the whole slide images

This function takes a slide collection and plot all the whole slide images in a square aspect ratio.

Parameters:

• dataset – Name of the dataset

• processed_adata (ad.AnnData) – Processed and filtered data ready to use by the model.

• path (str) – Path to save the plot.