spared.plotting.plot_exp_frac

spared.plotting.plot_exp_frac(param_dict: dict, dataset: str, raw_adata: AnnData, path: str) → None

Plot heatmap of expression fraction

This function plots a heatmap of the expression fraction and global expression fraction for the complete collection of slides.

Parameters:

• raw_adata (ad.AnnData) – An unfiltered and unprocessed (in raw counts) slide collection.

• path (str) – Path to save the plot.